Multi-lineages of Shiikuwasha (Citrus depressa Hayata) evaluated by using whole chloroplast genome sequences and its bio-diversity in Okinawa, Japan
Identifieur interne : 000117 ( Main/Exploration ); précédent : 000116; suivant : 000118Multi-lineages of Shiikuwasha (Citrus depressa Hayata) evaluated by using whole chloroplast genome sequences and its bio-diversity in Okinawa, Japan
Auteurs : Ryuji Ishikawa [Japon] ; Nathan Badenoch [Japon] ; Kunimasa Miyagi [Japon] ; Kaname Medoruma [Japon] ; Toshiki Osada [Japon] ; Masayuki Onishi [Japon]Source :
- Breeding Science [ 1344-7610 ] ; 2016.
Abstract
Shiikuwasha (
Url:
DOI: 10.1270/jsbbs.15151
PubMed: 27795674
PubMed Central: 5010300
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000E67
- to stream Pmc, to step Curation: 000E66
- to stream Pmc, to step Checkpoint: 000096
- to stream Ncbi, to step Merge: 002219
- to stream Ncbi, to step Curation: 002219
- to stream Ncbi, to step Checkpoint: 002219
- to stream Main, to step Merge: 000117
- to stream Main, to step Curation: 000117
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Multi-lineages of Shiikuwasha (<italic>Citrus depressa</italic> Hayata) evaluated by using whole chloroplast genome sequences and its bio-diversity in Okinawa, Japan</title><author><name sortKey="Ishikawa, Ryuji" sort="Ishikawa, Ryuji" uniqKey="Ishikawa R" first="Ryuji" last="Ishikawa">Ryuji Ishikawa</name><affiliation wicri:level="1"><nlm:aff id="af1-66_15151"><institution>Faculty of Agriculture and Life Science, Hirosaki University</institution>,<addr-line>Hirosaki, Aomori 036-8561</addr-line>,<country>Japan</country></nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Badenoch, Nathan" sort="Badenoch, Nathan" uniqKey="Badenoch N" first="Nathan" last="Badenoch">Nathan Badenoch</name><affiliation wicri:level="1"><nlm:aff id="af2-66_15151"><institution>Center for Southeast Asian Studies, Kyoto University</institution>,<addr-line>Kyoto, Kyoto 606-8501</addr-line>,<country>Japan</country></nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Miyagi, Kunimasa" sort="Miyagi, Kunimasa" uniqKey="Miyagi K" first="Kunimasa" last="Miyagi">Kunimasa Miyagi</name><affiliation wicri:level="1"><nlm:aff id="af3-66_15151"><institution>Association of Shishigaki Network</institution>,<addr-line>Naha, Okinawa 902-0071</addr-line>,<country>Japan</country></nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Medoruma, Kaname" sort="Medoruma, Kaname" uniqKey="Medoruma K" first="Kaname" last="Medoruma">Kaname Medoruma</name><affiliation wicri:level="1"><nlm:aff id="af4-66_15151"><institution>Okinawa prefectural Chūbu Agricultural Development Center, Department of Agriculture, Forestry and Fisheries, Okinawa Prefecture</institution>,<addr-line>Nago, Okinawa 904-2155</addr-line>,<country>Japan</country></nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Osada, Toshiki" sort="Osada, Toshiki" uniqKey="Osada T" first="Toshiki" last="Osada">Toshiki Osada</name><affiliation wicri:level="1"><nlm:aff id="af5-66_15151"><institution>Research Institute of Humanity and Nature</institution>,<addr-line>Kyoto, Kyoto 603-8047</addr-line>,<country>Japan</country></nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Onishi, Masayuki" sort="Onishi, Masayuki" uniqKey="Onishi M" first="Masayuki" last="Onishi">Masayuki Onishi</name><affiliation wicri:level="1"><nlm:aff id="af6-66_15151"><institution>Research Center for Knowledge Science in Cultural Heritage, Doshisha University</institution>,<addr-line>Kyoto, Kyoto 610-0394</addr-line>,<country>Japan</country></nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27795674</idno><idno type="pmc">5010300</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5010300</idno><idno type="RBID">PMC:5010300</idno><idno type="doi">10.1270/jsbbs.15151</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000E67</idno><idno type="wicri:Area/Pmc/Curation">000E66</idno><idno type="wicri:Area/Pmc/Checkpoint">000096</idno><idno type="wicri:Area/Ncbi/Merge">002219</idno><idno type="wicri:Area/Ncbi/Curation">002219</idno><idno type="wicri:Area/Ncbi/Checkpoint">002219</idno><idno type="wicri:doubleKey">1344-7610:2016:Ishikawa R:multi:lineages:of</idno><idno type="wicri:Area/Main/Merge">000117</idno><idno type="wicri:Area/Main/Curation">000117</idno><idno type="wicri:Area/Main/Exploration">000117</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Multi-lineages of Shiikuwasha (<italic>Citrus depressa</italic> Hayata) evaluated by using whole chloroplast genome sequences and its bio-diversity in Okinawa, Japan</title><author><name sortKey="Ishikawa, Ryuji" sort="Ishikawa, Ryuji" uniqKey="Ishikawa R" first="Ryuji" last="Ishikawa">Ryuji Ishikawa</name><affiliation wicri:level="1"><nlm:aff id="af1-66_15151"><institution>Faculty of Agriculture and Life Science, Hirosaki University</institution>,<addr-line>Hirosaki, Aomori 036-8561</addr-line>,<country>Japan</country></nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Badenoch, Nathan" sort="Badenoch, Nathan" uniqKey="Badenoch N" first="Nathan" last="Badenoch">Nathan Badenoch</name><affiliation wicri:level="1"><nlm:aff id="af2-66_15151"><institution>Center for Southeast Asian Studies, Kyoto University</institution>,<addr-line>Kyoto, Kyoto 606-8501</addr-line>,<country>Japan</country></nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Miyagi, Kunimasa" sort="Miyagi, Kunimasa" uniqKey="Miyagi K" first="Kunimasa" last="Miyagi">Kunimasa Miyagi</name><affiliation wicri:level="1"><nlm:aff id="af3-66_15151"><institution>Association of Shishigaki Network</institution>,<addr-line>Naha, Okinawa 902-0071</addr-line>,<country>Japan</country></nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Medoruma, Kaname" sort="Medoruma, Kaname" uniqKey="Medoruma K" first="Kaname" last="Medoruma">Kaname Medoruma</name><affiliation wicri:level="1"><nlm:aff id="af4-66_15151"><institution>Okinawa prefectural Chūbu Agricultural Development Center, Department of Agriculture, Forestry and Fisheries, Okinawa Prefecture</institution>,<addr-line>Nago, Okinawa 904-2155</addr-line>,<country>Japan</country></nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Osada, Toshiki" sort="Osada, Toshiki" uniqKey="Osada T" first="Toshiki" last="Osada">Toshiki Osada</name><affiliation wicri:level="1"><nlm:aff id="af5-66_15151"><institution>Research Institute of Humanity and Nature</institution>,<addr-line>Kyoto, Kyoto 603-8047</addr-line>,<country>Japan</country></nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Onishi, Masayuki" sort="Onishi, Masayuki" uniqKey="Onishi M" first="Masayuki" last="Onishi">Masayuki Onishi</name><affiliation wicri:level="1"><nlm:aff id="af6-66_15151"><institution>Research Center for Knowledge Science in Cultural Heritage, Doshisha University</institution>,<addr-line>Kyoto, Kyoto 610-0394</addr-line>,<country>Japan</country></nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></analytic><series><title level="j">Breeding Science</title><idno type="ISSN">1344-7610</idno><idno type="eISSN">1347-3735</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Shiikuwasha (<italic>Citrus depressa</italic> Hayata) is distributed from the South-west of the Japanese archipelago to Taiwan. In this study, re-sequencing against the orange (<italic>C. sinensis</italic> (L.) Osbeck) chloroplast genome was applied to one superior landrace of Shiikuwasha cultivated in Oku ward, Okinawa, Japan. The chloroplast genome of the landrace was estimated to comprise 160,118 bp, including 48 indels and 71 nucleotide substitutions against the reference genome. The presumptive chloroplast indels were confirmed by subsequent experiments, and these identified multiple maternal lineages among other landraces. Some of the orange SSR markers were available for genotyping of other superior landraces and were able to distinguish among them. These molecular markers were then applied for evaluation of genetic diversity among wild and cultivated Shiikuwasha accessions. Except for Oku ward, the cultivated populations were found to have lost their genetic diversity in comparison with wild populations. Groves in Oku ward maintained, or showed even higher genetic diversity than wild accessions in the surrounding areas by the force of villagers.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Japon</li></country></list><tree><country name="Japon"><noRegion><name sortKey="Ishikawa, Ryuji" sort="Ishikawa, Ryuji" uniqKey="Ishikawa R" first="Ryuji" last="Ishikawa">Ryuji Ishikawa</name></noRegion><name sortKey="Badenoch, Nathan" sort="Badenoch, Nathan" uniqKey="Badenoch N" first="Nathan" last="Badenoch">Nathan Badenoch</name><name sortKey="Medoruma, Kaname" sort="Medoruma, Kaname" uniqKey="Medoruma K" first="Kaname" last="Medoruma">Kaname Medoruma</name><name sortKey="Miyagi, Kunimasa" sort="Miyagi, Kunimasa" uniqKey="Miyagi K" first="Kunimasa" last="Miyagi">Kunimasa Miyagi</name><name sortKey="Onishi, Masayuki" sort="Onishi, Masayuki" uniqKey="Onishi M" first="Masayuki" last="Onishi">Masayuki Onishi</name><name sortKey="Osada, Toshiki" sort="Osada, Toshiki" uniqKey="Osada T" first="Toshiki" last="Osada">Toshiki Osada</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Bois/explor/OrangerV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000117 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000117 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Bois
|area= OrangerV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= PMC:5010300
|texte= Multi-lineages of Shiikuwasha (Citrus depressa Hayata) evaluated by using whole chloroplast genome sequences and its bio-diversity in Okinawa, Japan
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:27795674" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a OrangerV1
| This area was generated with Dilib version V0.6.25. |  |